Man pages for waldronlab/GSEABenchmarkeR
Reproducible GSEA Benchmarking
| bpPlot | Customized boxplot visualization of benchmark results |
| cacheResource | Caching of a resource |
| evalNrSigSets | Evaluating gene set rankings for the number of (significant)... |
| evalRandomGS | Evaluation of enrichment methods on random gene sets |
| evalRelevance | Evaluating phenotype relevance of gene set rankings |
| evalTypeIError | Evaluation of the type I error rate of enrichment methods |
| loadEData | Loading pre-defined and user-defined expression data |
| maPreproc | Preprocessing of microarray expression data |
| readDataId2diseaseCodeMap | Read a mapping between dataset ID and disease code |
| readResults | Reading results of enrichment analysis |
| runDE | Differential expression analysis for datasets of a compendium |
| runEA | Application of enrichment methods to multiple datasets |
