API for waldronlab/GSEABenchmarkeR
Reproducible GSEA Benchmarking

Global functions
.barplotRelScores Source code
.compPerm Source code
.compRankDistrib Source code
.deployScore Source code
.downloadGSE62944 Source code
.ea Source code
.eaPkgs Source code
.evalAUC Source code
.evalCor Source code
.evalTypeI Source code
.execEA Source code
.execPermBlocks Source code
.extractColData Source code
.filterByCPM Source code
.fractDE Source code
.getGeo2KeggIds Source code
.getPermMat Source code
.getResourceFromCache Source code
.getSampleType Source code
.groupSE Source code
.iter Source code
.loadEDataFromFile Source code
.loadGEO2KEGG Source code
.loadTCGA Source code
.methods2list Source code
.optScore Source code
.pairSE Source code
.plotOverallRankDistrib Source code
.postprocScores Source code
.randScore Source code
.readResultFile Source code
.readResultsOfMethod Source code
.rel2rel Source code
.relScore Source code
.retrieveFromCTD Source code
.retrieveGSE62944FromEHub Source code
.save2file Source code
.shuffleD2D Source code
.splitByCancerType Source code
benchmark Source code
bpPlot Man page Source code
cacheResource Man page Source code
compOpt Man page Source code
compRand Man page Source code
evalNrSets Man page Source code
evalNrSigSets Man page Source code
evalRandomGS Man page Source code
evalRelevance Man page Source code
evalTypeIError Man page Source code
loadEData Man page Source code
maPreproc Man page Source code
metaFC Man page Source code
plotDEDistribution Man page Source code
plotGSSizeRobustness Source code
plotNrSamples Man page Source code
plotTypeIError Source code
readDataId2diseaseCodeMap Man page Source code
readResults Man page Source code
runDE Man page Source code
runEA Man page Source code
writeDE Man page Source code
waldronlab/GSEABenchmarkeR documentation built on July 20, 2021, 2:14 p.m.