Files in waldronlab/HMP16SData
16S rRNA Sequencing Data from the Human Microbiome Project
.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/pull_request_template.md
.gitignore
CODE_OF_CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
HMP16SData.Rproj
LICENSE
NAMESPACE
NEWS.md
R/HMP16SData.R
R/V13.R
R/V35.R
R/align_kable.R
R/as_phyloseq.R
R/attach_dbGaP.R
R/calculate_n.R
R/calculate_n_and_p.R
R/calculate_p.R
R/count_rows.R
R/create_hub_accessors.R
R/dictionary.R
R/download_dbGaP.R
R/fix_MIAME.R
R/hub_accessor_factory.R
R/join_by_colnames.R
R/join_colData.R
R/join_n_and_p.R
R/kable_one.R
R/make_DataFrame.R
R/match_clade.R
R/order_rows.R
R/paths.R
R/pipe.R
R/quiet_join.R
R/quiet_read.R
R/read_dbGaP.R
R/table_one.R
R/tidy_data.R
R/zzz.R
README.Rmd
README.md
data-raw/V13.R
data-raw/V35.R
data-raw/download.R
data/dictionary.rda
inst/CITATION
inst/extdata/cart_DAR48406_201802201501.krt
inst/extdata/data.csv
inst/extdata/dictionary.csv
inst/extdata/md5.txt
inst/extdata/metadata.csv
inst/extdata/otu_table_psn_v13.txt.gz
inst/extdata/otu_table_psn_v35.txt.gz
inst/extdata/ppAll_V13_map.txt
inst/extdata/ppAll_V35_map.txt
inst/extdata/rep_set_v13.tre.gz
inst/extdata/rep_set_v35.tre.gz
inst/extdata/urls.csv
inst/extdata/v13_map_uniquebyPSN.txt.bz2
inst/extdata/v35_map_uniquebyPSN.txt.bz2
inst/scripts/make-data.R
inst/scripts/make-dictionary.R
inst/scripts/make-metadata.R
man/HMP16SData.Rd
man/V13.Rd
man/V35.Rd
man/as_phyloseq.Rd
man/attach_dbGaP.Rd
man/dictionary.Rd
man/kable_one.Rd
man/reexports.Rd
man/table_one.Rd
tests/testthat.R
tests/testthat/test-data.R
tests/testthat/test-metadata.R
vignettes/HMP16SData.Rmd
