as_phyloseq: Coerce a SummarizedExperiment object to a phyloseq object

View source: R/as_phyloseq.R

as_phyloseqR Documentation

Coerce a SummarizedExperiment object to a phyloseq object

Description

The phyloseq-package provides a suite of methods for working with 16S rRNA sequencing and other microbiome data that may be of use to the users of HMP16SData. The as_phyloseq method provides a means to easily coerce a SummarizedExperiment-class object to a phyloseq-class object.

Usage

as_phyloseq(x)

Arguments

x

A SummarizedExperiment-class object from the HMP16SData package

Value

A phyloseq-class object

Examples

V13() %>%
    as_phyloseq()


waldronlab/HMP16SData documentation built on Nov. 4, 2024, 7:50 a.m.