kable_one: Produce a summary HTML table of key demographic variables

In waldronlab/HMP16SData: 16S rRNA Sequencing Data from the Human Microbiome Project

Produce a summary HTML table of key demographic variables

Description

Sometimes it is desirable to produce a summary of key demographic variables for presentation. The table_one and kable_one methods are a quick way to do so – they not only summarize key demographic variables from SummarizedExperiment-class object(s) in the HMP16SData package but remove abbreviations and underscores in column and variable names that might otherwise be ambigious. The table_one method returns a tidy (i.e. one sample observation per line) data.frame object or a named list of tidy data.frame objects. The kable_one method can then be used to produce a publication-ready HTML table that could, for example, be pasted into a word processor.

Usage

kable_one(x, significant_figures = 2)

Arguments

x	A data.frame object or a named list of data.frame objects returned from the table_one method
significant_figures	The number of significant figures to be used for decimals in the HTML table; if no value is specified, the default is 2

Value

A summary HTML table of key demographic variables

See Also

table_one

Examples

V13() %>%
    table_one() %>%
    kable_one()

waldronlab/HMP16SData documentation built on Oct. 26, 2023, 5:42 a.m.