API for waldronlab/curatedMetagenomicData
Curated Metagenomic Data of the Human Microbiome

Global functions
AsnicarF_2017 Man page
AsnicarF_2017.genefamilies_relab.milk Man page
AsnicarF_2017.genefamilies_relab.stool Man page
AsnicarF_2017.marker_abundance.milk Man page
AsnicarF_2017.marker_abundance.stool Man page
AsnicarF_2017.marker_presence.milk Man page
AsnicarF_2017.marker_presence.stool Man page
AsnicarF_2017.metaphlan_bugs_list.milk Man page
AsnicarF_2017.metaphlan_bugs_list.stool Man page
AsnicarF_2017.pathabundance_relab.milk Man page
AsnicarF_2017.pathabundance_relab.stool Man page
AsnicarF_2017.pathcoverage.milk Man page
AsnicarF_2017.pathcoverage.stool Man page
Bengtsson-PalmeJ_2015 Man page
Bengtsson-PalmeJ_2015.genefamilies_relab.stool Man page
Bengtsson-PalmeJ_2015.marker_abundance.stool Man page
Bengtsson-PalmeJ_2015.marker_presence.stool Man page
Bengtsson-PalmeJ_2015.metaphlan_bugs_list.stool Man page
Bengtsson-PalmeJ_2015.pathabundance_relab.stool Man page
Bengtsson-PalmeJ_2015.pathcoverage.stool Man page
BritoIL_2016 Man page
BritoIL_2016.genefamilies_relab.oralcavity Man page
BritoIL_2016.genefamilies_relab.stool Man page
BritoIL_2016.marker_abundance.oralcavity Man page
BritoIL_2016.marker_abundance.stool Man page
BritoIL_2016.marker_presence.oralcavity Man page
BritoIL_2016.marker_presence.stool Man page
BritoIL_2016.metaphlan_bugs_list.oralcavity Man page
BritoIL_2016.metaphlan_bugs_list.stool Man page
BritoIL_2016.pathabundance_relab.oralcavity Man page
BritoIL_2016.pathabundance_relab.stool Man page
BritoIL_2016.pathcoverage.oralcavity Man page
BritoIL_2016.pathcoverage.stool Man page
Castro-NallarE_2015 Man page
Castro-NallarE_2015.genefamilies_relab.oralcavity Man page
Castro-NallarE_2015.marker_abundance.oralcavity Man page
Castro-NallarE_2015.marker_presence.oralcavity Man page
Castro-NallarE_2015.metaphlan_bugs_list.oralcavity Man page
Castro-NallarE_2015.pathabundance_relab.oralcavity Man page
Castro-NallarE_2015.pathcoverage.oralcavity Man page
ChngKR_2016 Man page
ChngKR_2016.genefamilies_relab.skin Man page
ChngKR_2016.marker_abundance.skin Man page
ChngKR_2016.marker_presence.skin Man page
ChngKR_2016.metaphlan_bugs_list.skin Man page
ChngKR_2016.pathabundance_relab.skin Man page
ChngKR_2016.pathcoverage.skin Man page
DavidLA_2015 Man page
DavidLA_2015.genefamilies_relab.stool Man page
DavidLA_2015.marker_abundance.stool Man page
DavidLA_2015.marker_presence.stool Man page
DavidLA_2015.metaphlan_bugs_list.stool Man page
DavidLA_2015.pathabundance_relab.stool Man page
DavidLA_2015.pathcoverage.stool Man page
ExpressionSet2MRexperiment Man page Source code
ExpressionSet2phyloseq Man page Source code
FengQ_2015 Man page
FengQ_2015.genefamilies_relab.stool Man page
FengQ_2015.marker_abundance.stool Man page
FengQ_2015.marker_presence.stool Man page
FengQ_2015.metaphlan_bugs_list.stool Man page
FengQ_2015.pathabundance_relab.stool Man page
FengQ_2015.pathcoverage.stool Man page
HMP_2012 Man page
HMP_2012.genefamilies_relab.nasalcavity Man page
HMP_2012.genefamilies_relab.oralcavity Man page
HMP_2012.genefamilies_relab.skin Man page
HMP_2012.genefamilies_relab.stool Man page
HMP_2012.genefamilies_relab.vagina Man page
HMP_2012.marker_abundance.nasalcavity Man page
HMP_2012.marker_abundance.oralcavity Man page
HMP_2012.marker_abundance.skin Man page
HMP_2012.marker_abundance.stool Man page
HMP_2012.marker_abundance.vagina Man page
HMP_2012.marker_presence.nasalcavity Man page
HMP_2012.marker_presence.oralcavity Man page
HMP_2012.marker_presence.skin Man page
HMP_2012.marker_presence.stool Man page
HMP_2012.marker_presence.vagina Man page
HMP_2012.metaphlan_bugs_list.nasalcavity Man page
HMP_2012.metaphlan_bugs_list.oralcavity Man page
HMP_2012.metaphlan_bugs_list.skin Man page
HMP_2012.metaphlan_bugs_list.stool Man page
HMP_2012.metaphlan_bugs_list.vagina Man page
HMP_2012.pathabundance_relab.nasalcavity Man page
HMP_2012.pathabundance_relab.oralcavity Man page
HMP_2012.pathabundance_relab.skin Man page
HMP_2012.pathabundance_relab.stool Man page
HMP_2012.pathabundance_relab.vagina Man page
HMP_2012.pathcoverage.nasalcavity Man page
HMP_2012.pathcoverage.oralcavity Man page
HMP_2012.pathcoverage.skin Man page
HMP_2012.pathcoverage.stool Man page
HMP_2012.pathcoverage.vagina Man page
HanniganGD_2017 Man page
HanniganGD_2017.genefamilies_relab.stool Man page
HanniganGD_2017.marker_abundance.stool Man page
HanniganGD_2017.marker_presence.stool Man page
HanniganGD_2017.metaphlan_bugs_list.stool Man page
HanniganGD_2017.pathabundance_relab.stool Man page
HanniganGD_2017.pathcoverage.stool Man page
Heitz-BuschartA_2016 Man page
Heitz-BuschartA_2016.genefamilies_relab.stool Man page
Heitz-BuschartA_2016.marker_abundance.stool Man page
Heitz-BuschartA_2016.marker_presence.stool Man page
Heitz-BuschartA_2016.metaphlan_bugs_list.stool Man page
Heitz-BuschartA_2016.pathabundance_relab.stool Man page
Heitz-BuschartA_2016.pathcoverage.stool Man page
KarlssonFH_2013 Man page
KarlssonFH_2013.genefamilies_relab.stool Man page
KarlssonFH_2013.marker_abundance.stool Man page
KarlssonFH_2013.marker_presence.stool Man page
KarlssonFH_2013.metaphlan_bugs_list.stool Man page
KarlssonFH_2013.pathabundance_relab.stool Man page
KarlssonFH_2013.pathcoverage.stool Man page
KosticAD_2015 Man page
KosticAD_2015.genefamilies_relab.stool Man page
KosticAD_2015.marker_abundance.stool Man page
KosticAD_2015.marker_presence.stool Man page
KosticAD_2015.metaphlan_bugs_list.stool Man page
KosticAD_2015.pathabundance_relab.stool Man page
KosticAD_2015.pathcoverage.stool Man page
LeChatelierE_2013 Man page
LeChatelierE_2013.genefamilies_relab.stool Man page
LeChatelierE_2013.marker_abundance.stool Man page
LeChatelierE_2013.marker_presence.stool Man page
LeChatelierE_2013.metaphlan_bugs_list.stool Man page
LeChatelierE_2013.pathabundance_relab.stool Man page
LeChatelierE_2013.pathcoverage.stool Man page
LiJ_2014 Man page
LiJ_2014.genefamilies_relab.stool Man page
LiJ_2014.marker_abundance.stool Man page
LiJ_2014.marker_presence.stool Man page
LiJ_2014.metaphlan_bugs_list.stool Man page
LiJ_2014.pathabundance_relab.stool Man page
LiJ_2014.pathcoverage.stool Man page
LiJ_2017 Man page
LiJ_2017.genefamilies_relab.stool Man page
LiJ_2017.marker_abundance.stool Man page
LiJ_2017.marker_presence.stool Man page
LiJ_2017.metaphlan_bugs_list.stool Man page
LiJ_2017.pathabundance_relab.stool Man page
LiJ_2017.pathcoverage.stool Man page
LiSS_2016 Man page
LiSS_2016.genefamilies_relab.stool Man page
LiSS_2016.marker_abundance.stool Man page
LiSS_2016.marker_presence.stool Man page
LiSS_2016.metaphlan_bugs_list.stool Man page
LiSS_2016.pathabundance_relab.stool Man page
LiSS_2016.pathcoverage.stool Man page
LiuW_2016 Man page
LiuW_2016.genefamilies_relab.stool Man page
LiuW_2016.marker_abundance.stool Man page
LiuW_2016.marker_presence.stool Man page
LiuW_2016.metaphlan_bugs_list.stool Man page
LiuW_2016.pathabundance_relab.stool Man page
LiuW_2016.pathcoverage.stool Man page
LomanNJ_2013 Man page
LomanNJ_2013.genefamilies_relab.stool Man page
LomanNJ_2013.marker_abundance.stool Man page
LomanNJ_2013.marker_presence.stool Man page
LomanNJ_2013.metaphlan_bugs_list.stool Man page
LomanNJ_2013.pathabundance_relab.stool Man page
LomanNJ_2013.pathcoverage.stool Man page
LoombaR_2017 Man page
LoombaR_2017.genefamilies_relab.stool Man page
LoombaR_2017.marker_abundance.stool Man page
LoombaR_2017.marker_presence.stool Man page
LoombaR_2017.metaphlan_bugs_list.stool Man page
LoombaR_2017.pathabundance_relab.stool Man page
LoombaR_2017.pathcoverage.stool Man page
LouisS_2016 Man page
LouisS_2016.genefamilies_relab.stool Man page
LouisS_2016.marker_abundance.stool Man page
LouisS_2016.marker_presence.stool Man page
LouisS_2016.metaphlan_bugs_list.stool Man page
LouisS_2016.pathabundance_relab.stool Man page
LouisS_2016.pathcoverage.stool Man page
NielsenHB_2014 Man page
NielsenHB_2014.genefamilies_relab.stool Man page
NielsenHB_2014.marker_abundance.stool Man page
NielsenHB_2014.marker_presence.stool Man page
NielsenHB_2014.metaphlan_bugs_list.stool Man page
NielsenHB_2014.pathabundance_relab.stool Man page
NielsenHB_2014.pathcoverage.stool Man page
Obregon-TitoAJ_2015 Man page
Obregon-TitoAJ_2015.genefamilies_relab.stool Man page
Obregon-TitoAJ_2015.marker_abundance.stool Man page
Obregon-TitoAJ_2015.marker_presence.stool Man page
Obregon-TitoAJ_2015.metaphlan_bugs_list.stool Man page
Obregon-TitoAJ_2015.pathabundance_relab.stool Man page
Obregon-TitoAJ_2015.pathcoverage.stool Man page
OhJ_2014 Man page
OhJ_2014.genefamilies_relab.skin Man page
OhJ_2014.marker_abundance.skin Man page
OhJ_2014.marker_presence.skin Man page
OhJ_2014.metaphlan_bugs_list.skin Man page
OhJ_2014.pathabundance_relab.skin Man page
OhJ_2014.pathcoverage.skin Man page
OlmMR_2017 Man page
OlmMR_2017.genefamilies_relab.oralcavity Man page
OlmMR_2017.genefamilies_relab.skin Man page
OlmMR_2017.genefamilies_relab.stool Man page
OlmMR_2017.marker_abundance.oralcavity Man page
OlmMR_2017.marker_abundance.skin Man page
OlmMR_2017.marker_abundance.stool Man page
OlmMR_2017.marker_presence.oralcavity Man page
OlmMR_2017.marker_presence.skin Man page
OlmMR_2017.marker_presence.stool Man page
OlmMR_2017.metaphlan_bugs_list.oralcavity Man page
OlmMR_2017.metaphlan_bugs_list.skin Man page
OlmMR_2017.metaphlan_bugs_list.stool Man page
OlmMR_2017.pathabundance_relab.oralcavity Man page
OlmMR_2017.pathabundance_relab.skin Man page
OlmMR_2017.pathabundance_relab.stool Man page
OlmMR_2017.pathcoverage.oralcavity Man page
OlmMR_2017.pathcoverage.skin Man page
OlmMR_2017.pathcoverage.stool Man page
PasolliE_2018 Man page
PasolliE_2018.genefamilies_relab.stool Man page
PasolliE_2018.marker_abundance.stool Man page
PasolliE_2018.marker_presence.stool Man page
PasolliE_2018.metaphlan_bugs_list.stool Man page
PasolliE_2018.pathabundance_relab.stool Man page
PasolliE_2018.pathcoverage.stool Man page
QinJ_2012 Man page
QinJ_2012.genefamilies_relab.stool Man page
QinJ_2012.marker_abundance.stool Man page
QinJ_2012.marker_presence.stool Man page
QinJ_2012.metaphlan_bugs_list.stool Man page
QinJ_2012.pathabundance_relab.stool Man page
QinJ_2012.pathcoverage.stool Man page
QinN_2014 Man page
QinN_2014.genefamilies_relab.stool Man page
QinN_2014.marker_abundance.stool Man page
QinN_2014.marker_presence.stool Man page
QinN_2014.metaphlan_bugs_list.stool Man page
QinN_2014.pathabundance_relab.stool Man page
QinN_2014.pathcoverage.stool Man page
RampelliS_2015 Man page
RampelliS_2015.genefamilies_relab.stool Man page
RampelliS_2015.marker_abundance.stool Man page
RampelliS_2015.marker_presence.stool Man page
RampelliS_2015.metaphlan_bugs_list.stool Man page
RampelliS_2015.pathabundance_relab.stool Man page
RampelliS_2015.pathcoverage.stool Man page
RaymondF_2016 Man page
RaymondF_2016.genefamilies_relab.stool Man page
RaymondF_2016.marker_abundance.stool Man page
RaymondF_2016.marker_presence.stool Man page
RaymondF_2016.metaphlan_bugs_list.stool Man page
RaymondF_2016.pathabundance_relab.stool Man page
RaymondF_2016.pathcoverage.stool Man page
SchirmerM_2016 Man page
SchirmerM_2016.genefamilies_relab.stool Man page
SchirmerM_2016.marker_abundance.stool Man page
SchirmerM_2016.marker_presence.stool Man page
SchirmerM_2016.metaphlan_bugs_list.stool Man page
SchirmerM_2016.pathabundance_relab.stool Man page
SchirmerM_2016.pathcoverage.stool Man page
ShiB_2015 Man page
ShiB_2015.genefamilies_relab.oralcavity Man page
ShiB_2015.marker_abundance.oralcavity Man page
ShiB_2015.marker_presence.oralcavity Man page
ShiB_2015.metaphlan_bugs_list.oralcavity Man page
ShiB_2015.pathabundance_relab.oralcavity Man page
SmitsSA_2017 Man page
SmitsSA_2017.genefamilies_relab.stool Man page
SmitsSA_2017.marker_abundance.stool Man page
SmitsSA_2017.marker_presence.stool Man page
SmitsSA_2017.metaphlan_bugs_list.stool Man page
SmitsSA_2017.pathabundance_relab.stool Man page
SmitsSA_2017.pathcoverage.stool Man page
TettAJ_2016 Man page
TettAJ_2016.genefamilies_relab.skin Man page
TettAJ_2016.marker_abundance.skin Man page
TettAJ_2016.marker_presence.skin Man page
TettAJ_2016.metaphlan_bugs_list.skin Man page
TettAJ_2016.pathabundance_relab.skin Man page
TettAJ_2016.pathcoverage.skin Man page
ThomasAM_2018a Man page
ThomasAM_2018a.genefamilies_relab.stool Man page
ThomasAM_2018a.marker_abundance.stool Man page
ThomasAM_2018a.marker_presence.stool Man page
ThomasAM_2018a.metaphlan_bugs_list.stool Man page
ThomasAM_2018a.pathabundance_relab.stool Man page
ThomasAM_2018a.pathcoverage.stool Man page
VatanenT_2016 Man page
VatanenT_2016.genefamilies_relab.stool Man page
VatanenT_2016.marker_abundance.stool Man page
VatanenT_2016.marker_presence.stool Man page
VatanenT_2016.metaphlan_bugs_list.stool Man page
VatanenT_2016.pathabundance_relab.stool Man page
VatanenT_2016.pathcoverage.stool Man page
VincentC_2016 Man page
VincentC_2016.genefamilies_relab.stool Man page
VincentC_2016.marker_abundance.stool Man page
VincentC_2016.marker_presence.stool Man page
VincentC_2016.metaphlan_bugs_list.stool Man page
VincentC_2016.pathabundance_relab.stool Man page
VincentC_2016.pathcoverage.stool Man page
VogtmannE_2016 Man page
VogtmannE_2016.genefamilies_relab.stool Man page
VogtmannE_2016.marker_abundance.stool Man page
VogtmannE_2016.marker_presence.stool Man page
VogtmannE_2016.metaphlan_bugs_list.stool Man page
VogtmannE_2016.pathabundance_relab.stool Man page
VogtmannE_2016.pathcoverage.stool Man page
WenC_2017 Man page
WenC_2017.genefamilies_relab.stool Man page
WenC_2017.marker_abundance.stool Man page
WenC_2017.marker_presence.stool Man page
WenC_2017.metaphlan_bugs_list.stool Man page
WenC_2017.pathabundance_relab.stool Man page
WenC_2017.pathcoverage.stool Man page
XieH_2016 Man page
XieH_2016.genefamilies_relab.stool Man page
XieH_2016.marker_abundance.stool Man page
XieH_2016.marker_presence.stool Man page
XieH_2016.metaphlan_bugs_list.stool Man page
XieH_2016.pathabundance_relab.stool Man page
XieH_2016.pathcoverage.stool Man page
YuJ_2015 Man page
YuJ_2015.genefamilies_relab.stool Man page
YuJ_2015.marker_abundance.stool Man page
YuJ_2015.marker_presence.stool Man page
YuJ_2015.metaphlan_bugs_list.stool Man page
YuJ_2015.pathabundance_relab.stool Man page
YuJ_2015.pathcoverage.stool Man page
ZellerG_2014 Man page
ZellerG_2014.genefamilies_relab.stool Man page
ZellerG_2014.marker_abundance.stool Man page
ZellerG_2014.marker_presence.stool Man page
ZellerG_2014.metaphlan_bugs_list.stool Man page
ZellerG_2014.pathabundance_relab.stool Man page
ZellerG_2014.pathcoverage.stool Man page
cmdIsValidVersion Source code
cmdValidVersions Man page Source code
combined_metadata Man page
curatedMetagenomicData Man page Source code
curatedMetagenomicData-package Man page
getMetaphlanTree Man page Source code
joinListOfDFs Source code
joinListOfMatrices Source code
mergeData Man page Source code
onAttach Source code
onLoad Source code
waldronlab/curatedMetagenomicData documentation built on Nov. 6, 2018, 6:45 p.m.