waldronlab/curatedMetagenomicData
Curated Metagenomic Data of the Human Microbiome

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combined_metadata: Combined metadata of all studies in curatedMetagenomicData curatedMetagenomicData: Curated Metagenomic Data of the Human Microbiome ExpressionSet2phyloseq: Convert an ExpressionSet object to a phyloseq object getMetaphlanTree: Title Return a phylogenetic tree for MetaPhlAn2 bugs LomanNJ_2013: Data from the LomanNJ_2013 study mergeData: Title Merge a list of curatedMetagenomicData datasets OhJ_2014: Data from the OhJ_2014 study
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mergeData getMetaphlanTree curatedMetagenomicData curatedMetagenomicData-package curatedMetagenomicData combined_metadata cmdValidVersions
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tests/testthat/test-mergeData.R tests/testthat/test-curatedMetagenomicData.R tests/testthat/test-cmdValidVersions.R tests/testthat/test-HiddenFunctions.R tests/testthat/test-ExpressionSet2phyloseq.R tests/testthat/test-ExpressionSet2MRexperiment.R tests/testthat.R
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waldronlab/curatedMetagenomicData: Curated Metagenomic Data of the Human Microbiome

waldronlab/curatedMetagenomicData: Curated Metagenomic Data of the Human Microbiome
Version 1.11.3

The curatedMetagenomicData package provides microbial taxonomic, functional, and gene marker abundance for samples collected from different bodysites.

Getting started

README.md

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Vignettes Man pages API and functions Files

Package details
Author Lucas Schiffer <[email protected]>, Edoardo Pasolli <[email protected]>, Levi Waldron <[email protected]>, Faizan Malik <[email protected]>, Nicola Segata <[email protected]>, Valerie Obenchain <[email protected]>, Morgan Martin <[email protected]>
Bioconductor views Homo_sapiens_Data MicrobiomeData ReproducibleResearch
MaintainerLucas Schiffer <[email protected]>
LicenseArtistic-2.0
Version1.11.3
URL https://github.com/waldronlab/curatedMetagenomicData 
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R: 
install.packages("devtools")
library(devtools)
install_github("waldronlab/curatedMetagenomicData")
waldronlab/curatedMetagenomicData documentation built on July 17, 2018, 7 p.m.

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