waldronlab/curatedMetagenomicData
Curated Metagenomic Data of the Human Microbiome

Package index

Share

Search the waldronlab/curatedMetagenomicData package
Vignettes
Man pages
35
Popular Man pages
combined_metadata: Combined metadata of all studies in curatedMetagenomicData curatedMetagenomicData: Curated Metagenomic Data of the Human Microbiome ExpressionSet2phyloseq: Convert an ExpressionSet object to a phyloseq object getMetaphlanTree: Title Return a phylogenetic tree for MetaPhlAn2 bugs LomanNJ_2013: Data from the LomanNJ_2013 study mergeData: Title Merge a list of curatedMetagenomicData datasets OhJ_2014: Data from the OhJ_2014 study
Browse all...
API
246
Popular API
mergeData getMetaphlanTree curatedMetagenomicData curatedMetagenomicData-package curatedMetagenomicData combined_metadata cmdValidVersions
Browse all...
Browse all...
Source code
125
Popular Source code
tests/testthat/test-mergeData.R tests/testthat/test-curatedMetagenomicData.R tests/testthat/test-cmdValidVersions.R tests/testthat/test-HiddenFunctions.R tests/testthat/test-ExpressionSet2phyloseq.R tests/testthat/test-ExpressionSet2MRexperiment.R tests/testthat.R
Browse all...
Browse all...
Home
/
GitHub
/
waldronlab/curatedMetagenomicData: Curated Metagenomic Data of the Human Microbiome

waldronlab/curatedMetagenomicData: Curated Metagenomic Data of the Human Microbiome
Version 1.8.0

The curatedMetagenomicData package provides microbial taxonomic, functional, and gene marker abundance for samples collected from different bodysites.

Getting started

README.md

Browse package contents

Vignettes Man pages API and functions Files

Package details
Author Lucas Schiffer <[email protected]>, Edoardo Pasolli <[email protected]>, Levi Waldron <[email protected]>, Faizan Malik <[email protected]>, Nicola Segata <[email protected]>, Valerie Obenchain <[email protected]>, Morgan Martin <[email protected]>
Bioconductor views Homo_sapiens_Data MicrobiomeData ReproducibleResearch
MaintainerLucas Schiffer <[email protected]>
LicenseArtistic-2.0
Version1.8.0
URL https://github.com/waldronlab/curatedMetagenomicData 
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R: 
install.packages("devtools")
library(devtools)
install_github("waldronlab/curatedMetagenomicData")
waldronlab/curatedMetagenomicData documentation built on April 23, 2018, 10:16 p.m.

R Package Documentation

rdrr.io home R language documentation Run R code online Create free R Jupyter Notebooks

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
[email protected]
Personal blog

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close