waldronlab/lefser: R implementation of the LEfSE method for microbiome biomarker discovery
lefser is an implementation in R of the popular "LDA Effect Size (LEfSe)" method for microbiome biomarker discovery. It uses the Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis to find biomarkers of groups and sub-groups.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | Classification DifferentialExpression Microbiome Sequencing Software StatisticalMethod |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 1.15.3 |
| URL | https://github.com/waldronlab/lefser |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
