waldronlab/lefser: R implementation of the LEfSE method for microbiome biomarker discovery

lefser is the R implementation of the popular microbiome biomarker discovery too, LEfSe. It uses the Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis to find biomarkers from two-level groups (and optional sub-groups).

Getting started

Package details

Bioconductor views Classification DifferentialExpression Microbiome Sequencing Software StatisticalMethod
Maintainer
LicenseArtistic-2.0
Version1.15.8
URL https://github.com/waldronlab/lefser
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("waldronlab/lefser")
waldronlab/lefser documentation built on Sept. 8, 2024, 5:48 p.m.