In wallaceEcoMod/wallace: A Modular Platform for Reproducible Modeling of Species Niches and Distributions

library(knitr)
knit_engines$set(asis = function(options) {
  if (options$echo && options$eval) knit_child(text = options$code)
})
knitr::opts_chunk$set(message = FALSE, warning = FALSE, eval = FALSE)

Please find below the R code history from your Wallace v2.1.2 session.

You can reproduce your session results by running this R Markdown file in RStudio.

Each code block is called a "chunk", and you can run them either one-by-one or all at once by choosing an option in the "Run" menu at the top-right corner of the "Source" pane in RStudio.

For more detailed information see http://rmarkdown.rstudio.com).

Package installation

Wallace uses the following R packages that must be installed and loaded before starting.

library(spocc)
library(spThin)
library(dismo)
library(sf)
library(ENMeval)
library(wallace)

The Wallace session code .Rmd file is composed of a chain of module functions that are internal to Wallace. Each of these functions corresponds to a single module that the user ran during the session. To see the internal code for these module functions, click on the links in the .Rmd file. Users are encouraged to write custom code in the .Rmd directly to modify their analysis, and even modify the module function code to further customize. To see the source code for any module function, just type its name into the R console and press Return.

# example:
# just type the function name and press Return to see its source code
# paste this code into a new script to edit it
occs_queryDb

Your analyses are below.

wallaceEcoMod/wallace documentation built on March 24, 2024, 5:15 p.m.