Files in wallaceEcoMod/wallace
A Modular Platform for Reproducible Modeling of Species Niches and Distributions

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/custom_modules.R R/envs_ecoClimate.R R/envs_userEnvs.R R/envs_worldclim.R R/espace_nicheOv.R R/espace_occDens.R R/espace_pca.R R/helper_functions.R R/model_bioclim.R R/model_maxent.R R/occs_paleoDb.R R/occs_queryDb.R R/occs_userOccs.R R/part_partitionOccs.R R/penvs_bgExtent.R R/penvs_bgMask.R R/penvs_bgSample.R R/penvs_drawBgExtent.R R/penvs_userBgExtent.R R/poccs_removeByID.R R/poccs_selectOccs.R R/poccs_thinOccs.R R/run_wallace.R R/vis_bioclimPlot.R R/wallace-package.R R/xfer_area.R R/xfer_draw.R R/xfer_mess.R R/xfer_time.R R/xfer_userEnvs.R R/xfer_userExtent.R README.md

_pkgdown.yml

inst/CITATION

inst/extdata/Bassaricyon_alleni.csv

inst/extdata/Bassaricyon_alleni_bgPoints.csv

inst/extdata/Bassaricyon_neblina.csv

inst/extdata/Bassaricyon_neblina_bgPoints.csv

inst/extdata/Marmosops_sp.csv

inst/extdata/model.RDS

inst/extdata/shp/Bassaricyon_neblina.dbf

inst/extdata/shp/Bassaricyon_neblina.shp

inst/extdata/shp/Bassaricyon_neblina.shx

inst/extdata/wc/bio05.tif

inst/extdata/wc/bio06.tif

inst/extdata/wc/bio13.tif

inst/extdata/wc/bio14.tif

inst/extdata/wc/future/bio05.tif

inst/extdata/wc/future/bio06.tif

inst/extdata/wc/future/bio13.tif

inst/extdata/wc/future/bio14.tif

inst/extdata/wc/proj/no_projection.tif

inst/module_skeleton/skeleton.R inst/module_skeleton/skeleton.Rmd inst/module_skeleton/skeleton.md

inst/module_skeleton/skeleton.yml

inst/shiny/modules/envs_ecoclimate.yml

inst/shiny/modules/envs_userEnvs.R inst/shiny/modules/envs_userEnvs.Rmd inst/shiny/modules/envs_userEnvs.md

inst/shiny/modules/envs_userEnvs.yml

inst/shiny/modules/envs_worldclim.R inst/shiny/modules/envs_worldclim.Rmd inst/shiny/modules/envs_worldclim.md

inst/shiny/modules/envs_worldclim.yml

inst/shiny/modules/espace_nicheOv.R inst/shiny/modules/espace_nicheOv.Rmd inst/shiny/modules/espace_nicheOv.md

inst/shiny/modules/espace_nicheOv.yml

inst/shiny/modules/espace_occDens.R inst/shiny/modules/espace_occDens.Rmd inst/shiny/modules/espace_occDens.md

inst/shiny/modules/espace_occDens.yml

inst/shiny/modules/espace_pca.R inst/shiny/modules/espace_pca.Rmd inst/shiny/modules/espace_pca.md

inst/shiny/modules/espace_pca.yml

inst/shiny/modules/model_bioclim.R inst/shiny/modules/model_bioclim.Rmd inst/shiny/modules/model_bioclim.md

inst/shiny/modules/model_bioclim.yml

inst/shiny/modules/model_maxent.R inst/shiny/modules/model_maxent.Rmd inst/shiny/modules/model_maxent.md

inst/shiny/modules/model_maxent.yml

inst/shiny/modules/occs_paleoDb.R inst/shiny/modules/occs_paleoDb.Rmd inst/shiny/modules/occs_paleoDb.md

inst/shiny/modules/occs_paleoDb.yml

inst/shiny/modules/occs_queryDb.R inst/shiny/modules/occs_queryDb.Rmd inst/shiny/modules/occs_queryDb.md

inst/shiny/modules/occs_queryDb.yml

inst/shiny/modules/occs_userOccs.R inst/shiny/modules/occs_userOccs.Rmd inst/shiny/modules/occs_userOccs.md

inst/shiny/modules/occs_userOccs.yml

inst/shiny/modules/part_nonSpat.R inst/shiny/modules/part_nonSpat.Rmd inst/shiny/modules/part_nonSpat.md

inst/shiny/modules/part_nonSpat.yml

inst/shiny/modules/part_spat.R inst/shiny/modules/part_spat.Rmd inst/shiny/modules/part_spat.md

inst/shiny/modules/part_spat.yml

inst/shiny/modules/penvs_bgExtent.R inst/shiny/modules/penvs_bgExtent.Rmd inst/shiny/modules/penvs_bgExtent.md

inst/shiny/modules/penvs_bgExtent.yml

inst/shiny/modules/penvs_drawBgExtent.R inst/shiny/modules/penvs_drawBgExtent.Rmd inst/shiny/modules/penvs_drawBgExtent.md

inst/shiny/modules/penvs_drawBgExtent.yml

inst/shiny/modules/penvs_userBgExtent.R inst/shiny/modules/penvs_userBgExtent.Rmd inst/shiny/modules/penvs_userBgExtent.md

inst/shiny/modules/penvs_userBgExtent.yml

inst/shiny/modules/poccs_removeByID.R inst/shiny/modules/poccs_removeByID.Rmd inst/shiny/modules/poccs_removeByID.md

inst/shiny/modules/poccs_removeByID.yml

inst/shiny/modules/poccs_selectOccs.R inst/shiny/modules/poccs_selectOccs.Rmd inst/shiny/modules/poccs_selectOccs.md

inst/shiny/modules/poccs_selectOccs.yml

inst/shiny/modules/poccs_thinOccs.R inst/shiny/modules/poccs_thinOccs.Rmd inst/shiny/modules/poccs_thinOccs.md

inst/shiny/modules/poccs_thinOccs.yml

inst/shiny/modules/rep_markdown.R inst/shiny/modules/rep_markdown.Rmd inst/shiny/modules/rep_markdown.md

inst/shiny/modules/rep_markdown.yml

inst/shiny/modules/rep_refPackages.R inst/shiny/modules/rep_refPackages.Rmd inst/shiny/modules/rep_refPackages.md

inst/shiny/modules/rep_refPackages.yml

inst/shiny/modules/rep_rmms.R inst/shiny/modules/rep_rmms.Rmd inst/shiny/modules/rep_rmms.md

inst/shiny/modules/rep_rmms.yml

inst/shiny/modules/vis_bioclimPlot.R inst/shiny/modules/vis_bioclimPlot.Rmd inst/shiny/modules/vis_bioclimPlot.md

inst/shiny/modules/vis_bioclimPlot.yml

inst/shiny/modules/vis_mapPreds.R inst/shiny/modules/vis_mapPreds.Rmd inst/shiny/modules/vis_mapPreds.md

inst/shiny/modules/vis_mapPreds.yml

inst/shiny/modules/vis_maxentEvalPlot.R inst/shiny/modules/vis_maxentEvalPlot.Rmd inst/shiny/modules/vis_maxentEvalPlot.md

inst/shiny/modules/vis_maxentEvalPlot.yml

inst/shiny/modules/vis_responsePlot.R inst/shiny/modules/vis_responsePlot.Rmd inst/shiny/modules/vis_responsePlot.md

inst/shiny/modules/vis_responsePlot.yml

inst/shiny/modules/xfer_area.R inst/shiny/modules/xfer_area.Rmd inst/shiny/modules/xfer_area.md

inst/shiny/modules/xfer_area.yml

inst/shiny/modules/xfer_mess.R inst/shiny/modules/xfer_mess.Rmd inst/shiny/modules/xfer_mess.md

inst/shiny/modules/xfer_mess.yml

inst/shiny/modules/xfer_time.R inst/shiny/modules/xfer_time.Rmd inst/shiny/modules/xfer_time.md

inst/shiny/modules/xfer_time.yml

inst/shiny/modules/xfer_user.R inst/shiny/modules/xfer_user.Rmd inst/shiny/modules/xfer_user.md

inst/shiny/modules/xfer_user.yml

inst/shiny/server.R inst/shiny/ui.R

inst/shiny/www/css/styles.css

inst/shiny/www/favicon.ico

inst/shiny/www/img/UConn_Logo.jpg

inst/shiny/www/img/UConn_Logo.tiff

inst/shiny/www/img/aarhus.jpg

inst/shiny/www/img/andrea.png

inst/shiny/www/img/bethany.jpg

inst/shiny/www/img/bob.png

inst/shiny/www/img/brianM.jpeg

inst/shiny/www/img/bruno.png

inst/shiny/www/img/ccny_logo.jpg

inst/shiny/www/img/cory.png

inst/shiny/www/img/daniel.jpeg

inst/shiny/www/img/dean.png

inst/shiny/www/img/gc_logo.jpg

inst/shiny/www/img/gonzalo.png

inst/shiny/www/img/hannahO.jpeg

inst/shiny/www/img/jamie.jpg

inst/shiny/www/img/mary.png

inst/shiny/www/img/matt.png

inst/shiny/www/img/olivier.jpeg

inst/shiny/www/img/peteG.jpg

inst/shiny/www/img/rob.jpeg

inst/shiny/www/img/saraV.jpeg

inst/shiny/www/img/sarah.png

inst/shiny/www/img/uah.jpg

inst/shiny/www/img/ufg.jpg

inst/shiny/www/img/valentina.jpeg

inst/shiny/www/js/shinyjs-funcs.js

inst/shiny/www/logo.png

man/clearAll.Rd man/create_module.Rd man/ecoClimate_getdata.Rd man/ecoClimate_select.Rd man/ecospat.plot.nicheDEV.Rd man/envs_ecoClimate.Rd man/envs_userEnvs.Rd man/envs_worldclim.Rd man/espace_nicheOv.Rd man/espace_occDens.Rd man/espace_pca.Rd man/fmtSpN.Rd man/getRasterVals.Rd man/hlSpp.Rd man/model_bioclim.Rd man/model_maxent.Rd man/mxNonzeroCoefs.Rd man/occs_queryDb.Rd man/occs_userOccs.Rd man/part_partitionOccs.Rd man/penvs_bgExtent.Rd man/penvs_bgMask.Rd man/penvs_bgSample.Rd man/penvs_drawBgExtent.Rd man/penvs_userBgExtent.Rd man/poccs_removeByID.Rd man/poccs_selectOccs.Rd man/poccs_thinOccs.Rd man/polyZoom.Rd man/popUpContent.Rd man/predictMaxnet.Rd man/printVecAsis.Rd man/register_module.Rd man/remEnvsValsNA.Rd man/reverseLabel.Rd man/run_wallace.Rd man/smartProgress.Rd man/spName.Rd man/spurious.Rd man/vis_bioclimPlot.Rd man/wallace-package.Rd man/writeLog.Rd man/write_csv_robust.Rd man/xfer_area.Rd man/xfer_draw.Rd man/xfer_mess.Rd man/xfer_time.Rd man/xfer_userEnvs.Rd man/xfer_userExtent.Rd man/zoom2Occs.Rd

tests/README.txt

tests/testthat.R

tests/testthat/extdata/Marmosops_NA.csv

tests/testthat/extdata/Marmosops_sp.csv

tests/testthat/extdata/Marmosops_wrong.csv

tests/testthat/extdata/Marmosops_wrongSP.csv

tests/testthat/extdata/cerdocyon-thous-2.csv

tests/testthat/extdata/wc/proj/no_projection.tif

vignettes/vignette_img/Proj_1.png

vignettes/vignette_img/Proj_2.png

vignettes/vignette_img/Proj_3.png

vignettes/vignette_img/Proj_4.png

vignettes/vignette_img/Proj_5.png

vignettes/vignette_img/env_1.png

vignettes/vignette_img/env_2.png

vignettes/vignette_img/env_3.png

vignettes/vignette_img/envs_error.png

vignettes/vignette_img/espace_1.png

vignettes/vignette_img/espace_2.png

vignettes/vignette_img/espace_3.png

vignettes/vignette_img/espace_4.png

vignettes/vignette_img/espace_5.png

vignettes/vignette_img/espace_6.png

vignettes/vignette_img/espace_7.png

vignettes/vignette_img/logo.png

vignettes/vignette_img/model_1.png

vignettes/vignette_img/model_2.png

vignettes/vignette_img/model_3.png

vignettes/vignette_img/model_4.png

vignettes/vignette_img/model_5.png

vignettes/vignette_img/model_6.png

vignettes/vignette_img/module-addition.png

vignettes/vignette_img/occs_1.png

vignettes/vignette_img/occs_2.png

vignettes/vignette_img/occs_3.png

vignettes/vignette_img/occs_4.png

vignettes/vignette_img/occs_5.png

vignettes/vignette_img/occs_6.png

vignettes/vignette_img/orientation_1.png

vignettes/vignette_img/orientation_2.png

vignettes/vignette_img/part_1.png

vignettes/vignette_img/part_2.png

vignettes/vignette_img/penvs_1.png

vignettes/vignette_img/penvs_2.png

vignettes/vignette_img/penvs_3.png

vignettes/vignette_img/poccs_1.png

vignettes/vignette_img/poccs_2.png

vignettes/vignette_img/poccs_3.png

vignettes/vignette_img/poccs_4.png

vignettes/vignette_img/reprod_1a.png

vignettes/vignette_img/reprod_1b.png

vignettes/vignette_img/reprod_2a.png

vignettes/vignette_img/reprod_2b.png

vignettes/vignette_img/reprod_3a.png

vignettes/vignette_img/reprod_3b.png

vignettes/vignette_img/save_1.png

vignettes/vignette_img/save_2.png

vignettes/vignette_img/setup_1.png

vignettes/vignette_img/v1/0_a_intro.jpg

vignettes/vignette_img/v1/0_b_intro.jpg

vignettes/vignette_img/v1/0_c_intro.jpg

vignettes/vignette_img/v1/1_a_occ_data.jpg

vignettes/vignette_img/v1/1_b_occ_data.jpg

vignettes/vignette_img/v1/1_c_occ_data.jpg

vignettes/vignette_img/v1/1_d_occ_data.jpg

vignettes/vignette_img/v1/2_a_process_occs.jpg

vignettes/vignette_img/v1/2_b_process_occs.jpg

vignettes/vignette_img/v1/2_c_process_occs.jpg

vignettes/vignette_img/v1/2_d_process_occs.jpg

vignettes/vignette_img/v1/2_e_process_occs.jpg

vignettes/vignette_img/v1/2_f_process_occs.jpg

vignettes/vignette_img/v1/3_a_env_data.jpg

vignettes/vignette_img/v1/3_b_env_data.jpg

vignettes/vignette_img/v1/3_c_env_data.jpg

vignettes/vignette_img/v1/4_a_process_envs.jpg

vignettes/vignette_img/v1/4_b_process_envs.jpg

vignettes/vignette_img/v1/4_c_process_envs.jpg

vignettes/vignette_img/v1/5_a_partition_occs.jpg

vignettes/vignette_img/v1/5_b_partition_occs.jpg

vignettes/vignette_img/v1/6_a_model.jpg

vignettes/vignette_img/v1/6_b_model.jpg

vignettes/vignette_img/v1/6_c_model.jpg

vignettes/vignette_img/v1/6_d_model.jpg

vignettes/vignette_img/v1/7_a_visualize.jpg

vignettes/vignette_img/v1/7_b_visualize.jpg

vignettes/vignette_img/v1/7_c_visualize.jpg

vignettes/vignette_img/v1/7_d_visualize.jpg

vignettes/vignette_img/v1/8_a_project.jpg

vignettes/vignette_img/v1/8_b_project.jpg

vignettes/vignette_img/v1/8_c_project.jpg

vignettes/vignette_img/v1/rmd_1.jpg

vignettes/vignette_img/v1/rmd_2.jpg

vignettes/vignette_img/vis_1.png

vignettes/vignette_img/vis_2.png

vignettes/vignette_img/vis_3.png

vignettes/vignette_img/vis_4.png

vignettes/vignette_img/vis_5.png

vignettes/vignette_img/xfer_1.png

vignettes/vignette_img/xfer_2.png

vignettes/vignette_img/xfer_3.png

wallace.Rproj

wallaceEcoMod/wallace documentation built on March 24, 2024, 5:15 p.m.

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wallaceEcoMod/wallace
A Modular Platform for Reproducible Modeling of Species Niches and Distributions

Files in wallaceEcoMod/wallace
A Modular Platform for Reproducible Modeling of Species Niches and Distributions

R Package Documentation

Browse R Packages

We want your feedback!

wallaceEcoMod/wallace A Modular Platform for Reproducible Modeling of Species Niches and Distributions

Files in wallaceEcoMod/wallace A Modular Platform for Reproducible Modeling of Species Niches and Distributions

R Package Documentation

Browse R Packages

We want your feedback!

wallaceEcoMod/wallace
A Modular Platform for Reproducible Modeling of Species Niches and Distributions

Files in wallaceEcoMod/wallace
A Modular Platform for Reproducible Modeling of Species Niches and Distributions