housekeep: Title According to the coefficient of variation and the...

In wangjiaxuan666/fixbatch: The goal of packages is fixing the batch effect in data

Title According to the coefficient of variation and the expression sum, the stable observation value is selected

Description

Title According to the coefficient of variation and the expression sum, the stable observation value is selected

Usage

housekeep(data, expcv = 1, exphigh = 1, explow = 0)

Arguments

data	must be a data.frame or matrix
expcv	a number range 0 to 1, Sets the maximum quantile value of the coefficient of variation
exphigh	a number range 0 to 1, Sets the maximum quantile value of expression sum
explow	a number range 0 to 1, Sets the minimum quantile value of expression sum

Value

data

Examples

y <- matrix( rpois(1000, lambda=5), nrow=200 )
n = dim(y)
colnames(y) = paste(rep("sample",n[[2]]),1:n[[2]])
rownames(y) = paste(rep("gene",n[[1]]),1:n[[1]])
y = as.data.frame(y)
#data_hk = housekeep(data, expcv = 0.3, exphigh = 0.8, explow = 0.4)
#head(data_hk)

wangjiaxuan666/fixbatch documentation built on Jan. 25, 2024, 4:39 p.m.