seqdata: This is a function to merge BS-seq data from multiple...

In wangyuchen/MethyBayes: Full Bayesian Partition Model for Identifying Differentially Methylated Loci

Description

Return read counts and methylated reads counts for sites commonly mapped by all replicates.

Usage

seqdata(cases, controls)

Arguments

cases	A list of data frames for multiple biological replicates under treatment experiment.
controls	A list of data frames for multiple biological replicates under control experiment.

Value

A list of read counts, methylated reads and commonly mapped sites.

Examples

data("case1", "case2", "control1", "control2")
read_counts <- seqdata(list(case1, case2), list(control1, control2))

wangyuchen/MethyBayes documentation built on May 4, 2019, 12:58 a.m.