DE.ranking | R Documentation |
differential expression ranking using the network gene 1-expression file with NECorr format 2-list of network genes 3-expression factor table generate automatically 4-name of the studied sample read expressiontable from microarrays or RNAseq
DE.ranking(
exps,
GeneList,
factortab,
sample.l,
sample.names,
exps.file = FALSE
)
exps |
expression table |
GeneList |
gene list present in the network |
factortab |
table with factors |
sample.l |
the sample chosen for tissue specificity |
sample.names |
all the samples in the metadata |
exps.file |
the expression file |
ranks rank of the gene in DEG analysis
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