DE.ranking: DE.ranking
In warelab/NECorr: Gene Regulatory Network Correlations
DE.ranking R Documentation
DE.ranking
Description
differential expression ranking using the network gene
1-expression file with NECorr format
2-list of network genes
3-expression factor table generate automatically
4-name of the studied sample
read expressiontable from microarrays or RNAseq
Usage
DE.ranking(
exps,
GeneList,
factortab,
sample.l,
sample.names,
exps.file = FALSE
)
Arguments
exps
expression table
GeneList
gene list present in the network
factortab
table with factors
sample.l
the sample chosen for tissue specificity
sample.names
all the samples in the metadata
exps.file
the expression file
Value
ranks rank of the gene in DEG analysis
warelab/NECorr documentation built on Oct. 15, 2023, 11:31 a.m.
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| DE.ranking | R Documentation |
DE.ranking
Description
differential expression ranking using the network gene 1-expression file with NECorr format 2-list of network genes 3-expression factor table generate automatically 4-name of the studied sample read expressiontable from microarrays or RNAseq
Usage
DE.ranking(
exps,
GeneList,
factortab,
sample.l,
sample.names,
exps.file = FALSE
)
Arguments
exps |
expression table |
GeneList |
gene list present in the network |
factortab |
table with factors |
sample.l |
the sample chosen for tissue specificity |
sample.names |
all the samples in the metadata |
exps.file |
the expression file |
Value
ranks rank of the gene in DEG analysis
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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