DE.ranking: DE.ranking

Description Usage Arguments Value

View source: R/Utilities.R

Description

differential expression ranking using the network gene 1-expression file with NECorr format 2-list of network genes 3-expression factor table generate automatically 4-name of the studied sample read expressiontable from microarrays or RNAseq

Usage

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DE.ranking(
  exps,
  GeneList,
  factortab,
  sample.l,
  sample.names,
  exps.file = FALSE
)

Arguments

exps

expression table

GeneList

gene list present in the network

factortab

table with factors

sample.l

the sample chosen for tissue specificity

sample.names

all the samples in the metadata

exps.file

the expression file

Value

ranks rank of the gene in DEG analysis


warelab/NECorr documentation built on April 29, 2021, 6:47 a.m.