multiCorr: multiCorr

In warelab/NECorr: Gene Regulatory Network Correlations

multiCorr

Description

the function is calculating co-expression

Usage

multiCorr(
  x,
  net = NA,
  nsockets = 4,
  methods = c("GCC", "PCC", "SCC", "KCC"),
  sigmethod = c("two.sided", "one.sided"),
  nblocks = 10,
  verbose = TRUE,
  cpus = 1,
  pernum = 0,
  ...
)

Arguments

x	the table of expression
net	the network to test for co-expression
nsockets	number of parallel sockets
methods	correlation method
sigmethod	significance of the p-value for the chosen method
nblocks	number of blocks to be cut
verbose	enumerateall steps
cpus	number of cpu used
pernum	number of permutation for singificance test
...	other parameters

Value

corMAT a correlation matrix

warelab/NECorr documentation built on June 25, 2024, 7:25 a.m.