multiCorr: multiCorr

Description Usage Arguments Value

View source: R/CorrelationGini.R

Description

the function is calculating co-expression

Usage

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multiCorr(
  x,
  net = NA,
  nsockets = 4,
  methods = c("GCC", "PCC", "SCC", "KCC"),
  sigmethod = c("two.sided", "one.sided"),
  nblocks = 10,
  verbose = TRUE,
  cpus = 1,
  pernum = 0,
  ...
)

Arguments

x

the table of expression

net

the network to test for co-expression

nsockets

number of parallel sockets

methods

correlation method

sigmethod

significance of the p-value for the chosen method

nblocks

number of blocks to be cut

verbose

enumerateall steps

cpus

number of cpu used

pernum

number of permutation for singificance test

...

other parameters

Value

corMAT a correlation matrix


warelab/NECorr documentation built on April 29, 2021, 6:47 a.m.