Man pages for warrenmcg/sleuth-ALR
Compositional Approach to Sleuth Data Analysis
| alr_transformation | Calculate ALR |
| calculate_alr | Calculate ALR |
| calculate_clr | Calculate CLR |
| choose_denom | Choose denominator |
| clr_transformation | Centered Logratio Transformation |
| deseq_size_factors | Get DESeq2 Size Factors |
| find_iqlr_denoms | Find IQLR Denominators |
| geomean | Geometric mean |
| get_denom_names | Get Denom Name(s) |
| get_lr_functions | Get Logratio Function |
| impute_zeros | Impute Rounded Zeros |
| iqlr_transformation | Calculate IQLR |
| make_lr_sleuth_object | Make Compositional Sleuth Object |
| norm_identity | Norm Identity |
| process_extra_opts | Process extra options for main sleuth-ALR function |
| remove_essential_zeros | Remove Essential Zeros |
| sleuth_alr_results | Return sleuth-ALR Results Table |
