plotlcoratdiagram: Plot L-comoment Ratio Diagrams

Description Usage Arguments Value Author(s) See Also Examples

Description

Plot the L-comoment Ratio Diagrams from the lcoratdiagram object from the lcoratdiagram() function.

Usage

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plotlcoratdiagram(lcoratdiagram = NULL, group=NA,
                  xt2t3lim=c(-1,1), yt2t3lim=c(-1,1),
                  xt3t4lim=c(-1,1), yt3t4lim=c(-1,1),
                  xt2t4lim=c(-1,1), yt2t4lim=c(-1,1),
                  showbivarsim=FALSE, showsite=TRUE, showhiDsite=TRUE,
                  rhothres=Inf, tauthres=Inf,
                  barbells=TRUE, barbellwd=1.2, barbellpw=1/3,
                  showorigin=TRUE,
                  doxy=TRUE, doyx=TRUE,
                  pdft2t3file="lcoratT2T3.pdf",
                  pdft3t4file="lcoratT3T4.pdf",
                  pdft2t4file="lcoratT2T4.pdf",
                  verbose=TRUE, ...)

Arguments

lcoratdiagram

An object from lcoratdiagram function.

group

An optional group of interest to specially plot, this is matched against those groups provide by similarly named argument to lcoratdiagram.

xt2t3lim

.

yt2t3lim

.

xt3t4lim

.

yt3t4lim

.

xt2t4lim

.

yt2t4lim

.

showbivarsim

Show bivariate simulations, which were specified by the nsim argument of lcoratdiagram.

showsite

A logical on whether site ids are shown in the plots.

showhiDsite

A logical on whether ids for highly discordant sites are shown. If TRUE, then showsite is taken as FALSE.

rhothres

A threshold on Spearman's Rho. For Rho values greater than this threshold, special plotting operations are made.

tauthres

A threshold on Kendall's Tau. For Tau values greater than this threshold, special plotting operations are made.

barbells

A logical toggling whether barbells are drawn.

barbellwd

A factor multiplier on the barbell thicknesses, which are also dependent on the number of samples per site.

barbellpw

An exponent on the alpha of the rgb function for the color. This exponent should be less than 1 and increasingly less than 1 darkens the barbells.

showorigin

A logical toggling the drawing of the origin lines for the respective plots.

doxy

Show only symbols for the x with respect to y variable.

doyx

Show only symbols for the y with respect to x variable.

pdft2t3file

.

pdft3t4file

.

pdft2t4file

.

verbose

A logical that controls whether message updates on status are shown.

...

Additional arguments to pass to the lcoratdiagram.discordance function.

Value

Stuff happens.

Author(s)

W.H. Asquith

See Also

lcoratdiagram

Examples

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wasquith/lmomcoexta documentation built on May 30, 2019, 4:11 p.m.