manhattan_plot: Generate a Manhattan Plot of a GWAS result
In wcrump/GWAS.GLM: Perform GWAS by GLM
Description
Usage
Arguments
Value
View source: R/manhattan.plot.function.R
Description
Generate a Manhattan Plot of a GWAS result
Usage
1
manhattan_plot(marker_map, pvals, QTN_index = c(), trait = "unknown")
Arguments
marker_map
A data.frame containing markers with 3 columns: taxa, chromosome, and position (rows should be in the same order as the GWAS results)
pvals
The untransformed p-values from a GWAS test
QTN_index
The indices of any known QTNs
trait
The name of the trait
Value
A ggplot object Manhattan plot
wcrump/GWAS.GLM documentation built on March 30, 2020, 3:17 a.m.
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Description Usage Arguments Value
View source: R/manhattan.plot.function.R
Description
Generate a Manhattan Plot of a GWAS result
Usage
1 | manhattan_plot(marker_map, pvals, QTN_index = c(), trait = "unknown")
|
Arguments
marker_map |
A data.frame containing markers with 3 columns: taxa, chromosome, and position (rows should be in the same order as the GWAS results) |
pvals |
The untransformed p-values from a GWAS test |
QTN_index |
The indices of any known QTNs |
trait |
The name of the trait |
Value
A ggplot object Manhattan plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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