manhattan_plot: Generate a Manhattan Plot of a GWAS result
In wcrump/GWASP: GWAS with PCA

Generate a Manhattan Plot of a GWAS result

1	manhattan_plot(marker_map, pvals, QTN_index = c(), trait = "unknown")

`marker_map`	A data.frame containing marker 'rs', 'chr', and 'pos' (should be in the same order as the GWAS results)
`pvals`	The untransformed p-values from a GWAS test
`QTN_index`	The indices of any known QTNs
`trait`	The name of the trait

A ggplot object Manhattan plot

wcrump/GWASP documentation built on April 4, 2020, 5:54 a.m.

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