Man pages for wefang/riso
Epigenome Isoform Analysis
| consolidateModels | Copy results from the model file to the main object. |
| convert2bin | Convert alignment files to bin counts (both treatment and... |
| EpiDatatype-class | Class for an epigenomics data type to be added to the... |
| findIsoforms | Main function to run isoform searching algorithm |
| generateMatrices | Generate count matrices for each chromosome, each matrix is... |
| generateModelFile | Generate the model files for fitting |
| getSizeFactors | Only used when file type given is binary bin counts already,... |
| IsoformTrain-class | The main class for training an isoform model |
| runModelFit | Run model fit for a selected set of domains |
| setupDomainModel | Setup the domain models |
