EpiDatatype-class: Class for an epigenomics data type to be added to the...

In wefang/riso: Epigenome Isoform Analysis

Description

Class for an epigenomics data type to be added to the analysis.

Slots

name

The name of the epigenomic data type.

table

A data frame with each row corresponding to a sample. Requires 'experiment' and 'trt.file' columns. If has.control is TURE, 'ctrl.file' column is required..

experiments

Names of the experiments used for the analysis.

file.type

The type of the alignment files, currently supporting .bam and .tagAlign.

has.control

A logical value indicating if the data type has input samples.

data.dir

The directory of data files

sig.range

A GenomicRanges object prespecifing where to look for signals in the genome.

bin.width

The length of bins to be used for summarizing counts.

chrlen.file

A text file with the length of chromosomes of the target genome.

chr.count

The number of chromosomes there is.

wefang/riso documentation built on May 4, 2019, 2:06 a.m.