The main class for training an isoform model
name
Name of the analysis.
data.types
Name of the epigenomic data types.
epidt
A list of EpiDatatype
objects.
domain
A GenomicRanges
object specifying the local domains over which to individual isoform models are to be applied.
domain.list
A list of DomainMod
objects, corresponding to each domains.
mod.dir
The directory for domain model files.
cell.types
Names of the cell types used for the analysis.
bin.width
The length of bins to be used for summarizing counts.
chrlen.file
A text file with the length of chromosomes of the target genome.
chr.count
The number of chromosomes there is.
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