IsoformTrain-class: The main class for training an isoform model

Description Slots

Description

The main class for training an isoform model

Slots

name

Name of the analysis.

data.types

Name of the epigenomic data types.

epidt

A list of EpiDatatype objects.

domain

A GenomicRanges object specifying the local domains over which to individual isoform models are to be applied.

domain.list

A list of DomainMod objects, corresponding to each domains.

mod.dir

The directory for domain model files.

cell.types

Names of the cell types used for the analysis.

bin.width

The length of bins to be used for summarizing counts.

chrlen.file

A text file with the length of chromosomes of the target genome.

chr.count

The number of chromosomes there is.


wefang/riso documentation built on May 4, 2019, 2:06 a.m.