regionCompplot: regionCompplot

Description Usage Arguments Value Examples

View source: R/base_summaryPlots.R

Description

regionCompplot returns a ggplot object with the Region Composition plot to analyze strand imbalance in ChIP-exo data.

Usage

1
regionCompplot(..., names.input = NULL, depth.values = seq_len(15))

Arguments

...

a list of ExoData objects, or several ExoData objects by themselves.

names.input

a character vector with the names to use in the plot. If it is empty regionCompplot is going to create the names as the names of the list when they are available or is going to name them as Sample: 1 ,... , Sample: k.

depth.values

a numeric vector indicating the regions with depth less or equal to, that are going to be filtered out. The defaulta values are seq_len(50).

Value

A ggplot2 object with the Region Composition plot.

Examples

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welch16/ChIPexoQual documentation built on March 21, 2018, 8:02 a.m.