bc_barcodes: Gets barcode sequences

In wenjie1991/Bc: Cellular DNA Barcode Analysis toolkit

Gets barcode sequences

Description

bc_barcodes used to get the barcode sequences in BarcodeObj object. The input BarcodesObj object should be pre-processed by bc_cure_* functions, such as bc_cure_depth, bc_cure_umi.

Usage

bc_barcodes(barcodeObj, unlist = TRUE)

## S4 method for signature 'BarcodeObj'
bc_barcodes(barcodeObj, unlist = TRUE)

Arguments

barcodeObj	A BarcodeObj object.
unlist	A logical value. If TRUE, the function returns a vector of unique barcode list from all samples; otherwise a list will be returned. In the latter case, each element of the list contains the barcodes of a sample.

Value

A character vector or a list.

Examples

data(bc_obj)

# Get unique barcodes vector of all samples
bc_barcodes(bc_obj)

# Get a list with each element containing barcodes from one sample
bc_barcodes(bc_obj, unlist = FALSE)

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wenjie1991/Bc documentation built on Aug. 10, 2024, 11:02 a.m.