bc_summary_seqQc: Summary barcodeQcSet

In wenjie1991/Bc: Cellular DNA Barcode Analysis toolkit

Summary barcodeQcSet

Description

Summary the "total read count" and "read length" of each samples within a BarcodeQcSet object, and output a data.frame with sample by row and different metrics by column.

Usage

bc_summary_seqQc(x)

## S4 method for signature 'BarcodeQcSet'
bc_summary_seqQc(x)

Arguments

x	a barcodeQcSet object.

Value

A data.frame with 5 columns: sample_name, total_read, median_read_length, p5_read_length and p95_read_length.

Examples

fq_file <- dir(
    system.file("extdata", "mef_test_data", package = "CellBarcode"),
    full=TRUE)

bc_summary_seqQc(bc_seq_qc(fq_file))
###

wenjie1991/Bc documentation built on Aug. 10, 2024, 11:02 a.m.