README.md
In wenlab501/EpiTrans: R package for estimation of epidemic transmissibility in time and space
EpiTrans
An R package for estimating Epidemic Transmissibility in time and space
contributors: Chen-Hsuan Tu, Ta-Chou Ng, and Tzai-Hung Wen
contact: Tzai-Hung Wen, National Taiwan University (wenthung@ntu.edu.tw)
Introduction
The package, EpiTrans, provides a new method for quantifying spatially adjusted (time-varying) reproductive numbers that reflects spatial heterogeneity in transmission potential among individuals. This method estimates individual-level effective reproductive numbers and a summarized indicator for population-level time-varying reproductive number.
Package Description
It provides several functions, including (1) plotting descriptive epidemic trends in time and space; (2) estimating reproductive numbers; (3) visualizing the graphics and animations of individual-level and aggregated-level reproductive numbers.
Installation
The package is available from Github. You can install the nightly build using the following R command:
library(devtools)
install_github("wenlab501/EpiTrans")
Tutorial
Click to see → Tutorial
Functions and datasets
Click to see → Content
wenlab501/EpiTrans documentation built on July 8, 2022, 9:14 a.m.
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EpiTrans
An R package for estimating Epidemic Transmissibility in time and space
contributors: Chen-Hsuan Tu, Ta-Chou Ng, and Tzai-Hung Wen contact: Tzai-Hung Wen, National Taiwan University (wenthung@ntu.edu.tw)
Introduction
The package, EpiTrans, provides a new method for quantifying spatially adjusted (time-varying) reproductive numbers that reflects spatial heterogeneity in transmission potential among individuals. This method estimates individual-level effective reproductive numbers and a summarized indicator for population-level time-varying reproductive number.
Package Description
It provides several functions, including (1) plotting descriptive epidemic trends in time and space; (2) estimating reproductive numbers; (3) visualizing the graphics and animations of individual-level and aggregated-level reproductive numbers.
Installation
The package is available from Github. You can install the nightly build using the following R command:
library(devtools) install_github("wenlab501/EpiTrans")
Tutorial
Click to see → Tutorial
Functions and datasets
Click to see → Content
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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