Man pages for wenlab501/EpiTrans
R package for estimation of epidemic transmissibility in time and space
| animate_duration | Visualizing the spatio-temporal pattern of an outbreak’s... |
| animate_grid | Visualizing the spatio-temporal pattern of an outbreak’s... |
| animate_points | Visualizing the spatio-temporal pattern of an outbreak’s... |
| animate_polygons | Visualizing the spatio-temporal pattern of choropleth map |
| bnd_modify | Adjust the boundary of the plot map |
| CreateBaseMap | Create base map |
| createPoints | Create points data |
| distLongLat | Calculate geometry distance |
| EpiTransLibrary | Pre-run package dependencies |
| GeoLocater | Calculate the number of cases. |
| lpdf_GI | Calculate the probability distribution of generation interval |
| lpdf_SW | Calculate probability distribution of tranmission distance |
| plot_epi | Draw the epidemic curve |
| plot_grid | Visualizing Point pattern |
| plot_hex | Visualizing Point pattern |
| plot_kde | Visualizing Point pattern |
| plot_lpdf_GI | Visualizing probability density functions. |
| plot_lpdf_SW | Visualizing probability density functions. |
| plot_points | Visualizing Point pattern |
| plot_polygons | Draw Choropleth map |
| plot_reigonTrans | Visualizing Town Level Reproductive Numbers |
| plot_Rt | Visualizing Time-varying reproductive numbers |
| plot_Tij | Visualizing Town Level Reproductive Numbers |
| plot_trans | Visualize pair-wise transmission likelihood |
| ReduceMatrix | Reduce individual transmission probablity matrix to region... |
| Rj | Calculate reproductive numbers |
| SequentialNumbering | Give sequential number by region |
