whtns/varbintools: Sequence Based Copy Number Detection Using Variable Bin Lengths

Determines copy number profiles by counting sequence read density in variable length genomic bins adjusted such that the number of potential uniquely mapping reads in each bin is normalized across the genome. This package provides methods to visualize, process and cluster copy number profiles derived from varbin.

Getting started

Package details

LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
whtns/varbintools documentation built on Dec. 1, 2019, 5:15 a.m.