R/data-examples.R

In wikiselev/SC3-old: Single-Cell Consensus Clustering

#' Single cell RNA-Seq data extracted from a publication by Steven Quake.
#'
#' Source: Treutlein, B. et al. Reconstructing lineage hierarchies of the distal
#' lung epithelium using single-cell RNA-seq. Nature 509, 371–375 (2014).
#'
#' \url{http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52583}
#'
#' Columns represent cells, rows represent genes expression values. Colnames
#' respresent indexes of cell clusters (known information based on the
#' experimental protocol). There are 80 cells and 5 clusters in this dataset.
"quake_all_fpkm"