Divergence: Functionality for assessing omics data by divergence with respect to a baseline

breastTCGA_ER | ER positive or negative status of breast tumor samples |

breastTCGA_Group | Normal or Tumor status of breast samples |

breastTCGA_Mat | Gene expression for 260 genes in 887 breast samples |

computeChiSquaredTest | Compute chi-squared test |

computeMultivariateBinaryMatrix | Compute the binary matrix with digitized divergence coding |

computeMultivariateDigitization | Perform binary digitization |

computeMultivariateSupport | Estimate the baseline support |

computeQuantileMatrix | Compute quantile transformations |

computeUnivariateDigitization | Perform ternary digitization |

computeUnivariateSupport | Estimate the baseline support |

computeUnivariateTernaryMatrix | Compute the ternary matrix with digitized divergence coding |

findMultivariateGammaWithSupport | Find optimal gamma and corresponding support for list of... |

findUnivariateGammaWithSupport | Search for optimal gamma and associated support |

msigdb_Hallmarks | Cancer Hallmark gene sets from the MSigDB collection |

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