wilkelab/sicegar: Analysis of Single-Cell Viral Growth Curves

Aims to quantify time intensity data by using sigmoidal and double sigmoidal curves. It fits straight lines, sigmoidal, and double sigmoidal curves on to time vs intensity data. Then all the fits are used to make decision on which model best describes the data. This method was first developed in the context of single-cell viral growth analysis (for details, see Caglar et al. (2018) <doi:10.7717/peerj.4251>), and the package name stands for "SIngle CEll Growth Analysis in R".

Getting started

Package details

LicenseGPL-2 | GPL-3
URL https://github.com/wilkelab/sicegar
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
wilkelab/sicegar documentation built on Aug. 25, 2019, 2:49 p.m.