Files in wilkelab/sicegar
Analysis of Single-Cell Viral Growth Curves

.Rbuildignore
.codecov.yml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/.DS_Store
R/categorize.R R/dataInputCheck.R R/doublesigmoidalFitFunctions.R R/figureGeneration.R R/mainFunctions.R R/multipleFitFunction.R R/normalizationFunction.R R/parameterCalculation.R R/sicegar.R R/sigmoidalFitFunctions.R README.md
appendixFigures/combinedSigmoidals.jpg
appendixFigures/combinedTripletSigmoidals.pdf appendixFigures/doubleSigmoidal.pdf
appendixFigures/doublesigmoidal.jpg
appendixFigures/multiplicationDoubleSigmoidal.jpg
appendixFigures/multiplicationDoubleSigmoidalProblem.jpg
appendixFigures/sicegarAppendixFigures.R inst/doc/additional_parameters.R inst/doc/additional_parameters.Rmd
inst/doc/additional_parameters.html
inst/doc/categorizing_fits.R inst/doc/categorizing_fits.Rmd
inst/doc/categorizing_fits.html
inst/doc/fitting_individual_models.R inst/doc/fitting_individual_models.Rmd
inst/doc/fitting_individual_models.html
inst/doc/introduction.R inst/doc/introduction.Rmd
inst/doc/introduction.html
inst/doc/plotting_fitted_models.R inst/doc/plotting_fitted_models.Rmd
inst/doc/plotting_fitted_models.html
man/categorize.Rd man/dataCheck.Rd man/doublesigmoidalFitFormula.Rd man/doublesigmoidalFitFunction.Rd man/figureModelCurves.Rd man/fitAndCategorize.Rd man/multipleFitFunction.Rd man/normalizeData.Rd man/parameterCalculation.Rd man/preCategorize.Rd man/sameSourceDataCheck.Rd man/sigmoidalFitFormula.Rd man/sigmoidalFitFunction.Rd man/unnormalizeData.Rd
sicegar.Rproj
sicegarPerformanceSimulations/ViolinDistribution.pdf sicegarPerformanceSimulations/ViolinDistributionExtended.pdf sicegarPerformanceSimulations/barDistribution.pdf sicegarPerformanceSimulations/barDistributionExtended.pdf
sicegarPerformanceSimulations/distinct_runs_supplementary_fig.Rda
sicegarPerformanceSimulations/distinct_runs_with_label_exp_supplementary_fig.csv
sicegarPerformanceSimulations/distinct_runs_with_label_supplementary_fig.Rda
sicegarPerformanceSimulations/extendedFigCombined.pdf sicegarPerformanceSimulations/figCombined.pdf sicegarPerformanceSimulations/replace_fun.R sicegarPerformanceSimulations/sicegarExtPerformanceTest_part1.R sicegarPerformanceSimulations/sicegarExtPerformanceTest_part1P.R sicegarPerformanceSimulations/sicegarExtPerformanceTest_part2.R sicegarPerformanceSimulations/sicegarExtPerformanceTest_part2P.R sicegarPerformanceSimulations/sicegarExtendedPerformanceFigures.R tests/testthat.R tests/testthat/test_fit_and_categorize.R tests/testthat/test_fit_functions.R vignettes/additional_parameters.Rmd vignettes/categorizing_fits.Rmd vignettes/fitting_individual_models.Rmd vignettes/introduction.Rmd vignettes/plotting_fitted_models.Rmd
wilkelab/sicegar documentation built on Dec. 8, 2017, 1:37 a.m.