align_reads: Align reads from a fastq file against a bowtie2 index
In wilkox/fqdecontamr: Remove contaminant reads from fastq files
Description
Align reads from a fastq file against a bowtie2 index
Usage
1
align_reads(fastq_file, index_path, species, threads = 1)
Arguments
fastq_file
Path of the fastq file to be aligned
index_path
Path of the bowtie2 index
species
Name of the contaminant species
threads
How many threads should bowtie2 use (default 1)
wilkox/fqdecontamr documentation built on Aug. 18, 2019, 4:36 a.m.
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Description
Align reads from a fastq file against a bowtie2 index
Usage
1 | align_reads(fastq_file, index_path, species, threads = 1)
|
Arguments
fastq_file |
Path of the fastq file to be aligned |
index_path |
Path of the bowtie2 index |
species |
Name of the contaminant species |
threads |
How many threads should bowtie2 use (default 1) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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