prepare_bowtie_index: Prepare a bowtie2 index

In wilkox/fqdecontamr: Remove contaminant reads from fastq files

Description

Prepare a bowtie2 index

Usage

prepare_bowtie_index(fasta_path, dir, species, ...)

Arguments

fasta_path	Path of the fasta file from which to prepare the index
dir	Directory in which to store the index
species	Name of the contaminant species
...	Other arguments that will be ignored

wilkox/fqdecontamr documentation built on Aug. 18, 2019, 4:36 a.m.