Pval_function: Pval_function
In willja16/GWAS.BAYES: GWAS for Selfing Species
Description
Usage
Arguments
Value
Description
Performs multiple comparison corrections on p-values and returns significant SNP's. This is used internally for the preselection function.
Usage
1
Pval_function(p_vals,n,thresh,control)
Arguments
p_vals
A vector of p-values calculated by the preselection function.
n
The original number of SNPs
thresh
The type 1 error rate
control
The multiple comparison correction one would like to apply.
Value
The results are formated as a data.frame with the column Significant being 1 or 0 depending on if the SNP was significant (1 for significant). The P_values column will be the p-values that were calculated for each SNP.
willja16/GWAS.BAYES documentation built on Sept. 24, 2020, 12:48 a.m.
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Description Usage Arguments Value
Description
Performs multiple comparison corrections on p-values and returns significant SNP's. This is used internally for the preselection function.
Usage
1 | Pval_function(p_vals,n,thresh,control)
|
Arguments
p_vals |
A vector of p-values calculated by the preselection function. |
n |
The original number of SNPs |
thresh |
The type 1 error rate |
control |
The multiple comparison correction one would like to apply. |
Value
The results are formated as a data.frame with the column Significant being 1 or 0 depending on if the SNP was significant (1 for significant). The P_values column will be the p-values that were calculated for each SNP.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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