aggregate_SNPs: aggregate_SNPs

In willja16/GWAS.BAYES: GWAS for Selfing Species

Description

Aggregate SNPs and Y by Species

Usage

aggregate_SNPs(SNPs,Y,na.rm)

Arguments

SNPs	Standardized SNP data set where the values of each column are either 0 or 1
Y	The phenotype response of interest
na.rm	Logical value where TRUE removes NA's in response vector as well corresponding rows in SNP matrix.

Value

SNPs	reduced SNP dataset
Y	reduced Y vector

Examples

data("vignette_lm_dat")
Y <- vignette_lm_dat$Phenotype
SNPs <- vignette_lm_dat[,-1]
SNPs <- standardize(SNPs = SNPs,method = "major-minor",number_cores = 1)

aggregate_SNPs(SNPs = SNPs, Y = Y)

willja16/GWAS.BAYES documentation built on Sept. 24, 2020, 12:48 a.m.