willpearse/pez: Phylogenetics for the Environmental Sciences
Eco-phylogenetic and community phylogenetic analyses. Keeps community ecological and phylogenetic data matched up and comparable using 'comparative.comm' objects. Wrappers for common community phylogenetic indices ('pez.shape', 'pez.evenness', 'pez.dispersion', and 'pez.dissimilarity' metrics). Implementation of Cavender-Bares (2004) correlation of phylogenetic and ecological matrices ('fingerprint.regression'). Phylogenetic Generalised Linear Mixed Models (PGLMMs; 'pglmm') following Ives & Helmus (2011) and Rafferty & Ives (2013). Simulation of null assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').
Getting started
Browse package contents
Package details |
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| Author | William D. Pearse, Marc W. Cadotte, Jeannine Cavender-Bares, Anthony R. Ives, Caroline Tucker, Steve C. Walker, Matthew R. Helmus |
| Maintainer | William D. Pearse <will.pearse@gmail.com> |
| License | GPL-3 |
| Version | 1.3-0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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