summaryTortuosity: Calculate tortuosity

In wittja01/ballr: Analyze Data Generated from Syntech Servosphere Trials

Description

Calculate the tortuosity, or straightness, of a movement path

Usage

summaryTortuosity(summary.df, total.distance, net.displacement,
  inverse = FALSE)

Arguments

summary.df	The summary data frame containing total distance and net displacement for all movement paths
total.distance	The unquoted variable name in a data frame containing the total distance for all movement paths
net.displacement	The unquoted variable name in a data frame containing the net displacement for all movement paths.
inverse	Defaults to FALSE. When set to FALSE, this function calculates tortuosity as net displacement divided by total distance. Setting inverse to TRUE causes the function to calculate tortuosity as total distance divided by net displacement.

Details

To use this function, a summary data frame must already exist containing a column for total distance and net displacement (in other words, your data should have been processed by summaryTotalDistance and summaryNetDisplacement.

Tortuosity is a measure of how straight a path is. There are different methods for calculating path straightness. This function calculates tortuosity as the quotient of net displacement and total distance by default. The quotient can be reversed by setting inverse to TRUE.

Value

The inputed data frame of numbers where each number corresponds to the tortuosity of a movement path. The numbers are ordered and named as they are in the data frames list.

Examples

# Calculate tortuosity as the ratio of net displacement to total distance

summary_df <- data.frame(id = c(1, 2),
                         treatment = c("a", "b"),
                         date = c("2032018", "2042018"),
                         stimulus = c(0, 0),
                         total_distance = runif(2, 11, 20),
                         net_displacement = runif(2, 5, 10))

summary_df <- summaryTortuosity(summary.df = summary_df,
  total.distance = total_distance,
  net.displacement = net_displacement)

# Calculate tortuosity as the ratio of total distance to net displacement
# (the opposite of the previous example)

summary_df <- summaryTortuosity(summary.df = summary_df,
  total.distance = total_distance,
  net.displacement = net_displacement,
  inverse = TRUE)

wittja01/ballr documentation built on Sept. 13, 2020, 10:02 p.m.