fit: Function 'fit'

In wlandau/fbseqComputation: fbseqComputation

Description

run benchmark methods on simulation objects

Usage

fit(path, benchmarks = c("edgeR", "Niemi"), fbseq_methods = c("fullybayes",
  "ebayesFromFullybayes", "ebayesFromStarts", "ebayesFromTruth"),
  priors = c("normal", special_beta_priors()), ncores = detectCores(),
  debug = F, configs = Configs(), zeronormfactors = F)

Arguments

path	to directory to save simulations and results
benchmarks	benchmark methods to run
fbseq_methods	"ebayesFromFullybayes", "ebayesFromStarts", "ebayesFromTruth", "fullybayes", or a combination/vector of these. "fullybayes" must come before "ebayesFromFullybayes".
priors	priors on the betas
ncores	number of cores for CPU-parallel methods
debug	debug mode, TRUE/FALSE
configs	Configs object for fbseq
zeronormfactors	TRUE/FALSE. If TRUE, starts@h is set to 0.

Value

path to simulated objects

wlandau/fbseqComputation documentation built on May 4, 2019, 8:43 a.m.