dot-sim_outliers: Simulates outliers from ok cells

In wmacnair/SampleQC: Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data

Simulates outliers from ok cells

Description

Outliers are assumed to be a combination of loss of non-mitochondrial counts and features. Each sample has a different proportion of outlier cells, and a different proportion of log counts lost.

Usage

.sim_outliers(x_ok, samples, outliers, out_j, J)

Arguments

x_ok	healthy cells
samples	list of sample membership
out_j	parameters for sample outliers
J	number of samples

Value

matrix of cell QC metrics including outliers

wmacnair/SampleQC documentation built on Nov. 18, 2022, 5 p.m.