meanScaledHydropathy: Calculate the Mean Scaled Hydropathy

In wmm27/idpr: Profiling and Analyzing Intrinsically Disordered Proteins in R

Calculate the Mean Scaled Hydropathy

Description

This function utilizes the scaledHydropathyGlobal() function and easily returns the averaged hydropathy as a numeric value.

Usage

meanScaledHydropathy(sequence, roundScore = NA)

Arguments

sequence	amino acid sequence as a single character string, a vector of single characters, or an AAString object. It also supports a single character string that specifies the path to a .fasta or .fa file.
roundScore	Number of decimals the score will be rounded to. NA by default.

Value

A numeric value equal to the Mean Scaled Hydropathy.

References

Kyte, J., & Doolittle, R. F. (1982). A simple method for displaying the hydropathic character of a protein. Journal of molecular biology, 157(1), 105-132.

See Also

KDNorm for residue values.

Other scaled hydropathy functions: KDNorm, foldIndexR(), scaledHydropathyGlobal(), scaledHydropathyLocal()

Examples

#Amino acid sequences can be character strings
aaString <- "ACDEFGHIKLMNPQRSTVWY"
#Amino acid sequences can also be character vectors
aaVector <- c("A", "C", "D", "E", "F",
              "G", "H", "I", "K", "L",
              "M", "N", "P", "Q", "R",
              "S", "T", "V", "W", "Y")
 #Alternatively, .fasta files can also be used by providing

#Calculate the mean scaled hydropathy
 meanScaledHydropathy(aaString)
 meanScaledHydropathy(aaVector)

wmm27/idpr documentation built on Jan. 12, 2023, 8:45 a.m.