Man pages for wolfemd/alphaSimHlpR
Functions added to AlphaSimR to simplify simulating breeding schemes
| adjustEntriesToBudget | adjustEntriesToBudget function |
| calcDerivedParms | calcDerivedParms function |
| calculateBudget | calculateBudget function |
| calculateChkReps | calculateChkReps function |
| checkAddRemove | checkAddRemove function |
| compound | Assignment pipe |
| dataframePhenoRec | dataframePhenoRec replaces framePhenoRec function post-burn... |
| elementWise | elementWise function |
| exposition | Exposition pipe |
| fillPipeline | fillPipeline function |
| framePhenoRec | framePhenoRec function |
| gebvPhenoEval | Predict the GEBV of all genotyped individuals |
| genomicMateSelCrit | Generate predictions of cross means or usefulness as genomic... |
| getParmsResponse | getParmsResponse function |
| grmPhenoEval | grmPhenoEval function |
| idx1 | idx1 function |
| iidPhenoEval | iidPhenoEval function |
| initFuncADChk | initFuncADChk function |
| initFuncSimp | initFuncSimp function |
| initializeScheme | initializeScheme function |
| insertRow | insertRow function |
| ip | packages installed at the machine |
| lastCycStgOut | lastCycStgOut function |
| make_grm | Function to make genomic relation matrices |
| makeGRM | makeGRM function |
| mean_records | mean_records function |
| optContrib | optContrib function |
| optimizeByLOESS | optimizeByLOESS function |
| parentSelCritBLUP | Generate BLUPs as phenotype-only parent selection criteria |
| parentSelCritGEBV | Generate GEBV as genomic parent selection criteria |
| phenoRecFromPop | phenoRecFromPop function |
| pipe | Pipe operator |
| plotRecords | plotRecords function |
| popImprov1Cyc | popImprov1Cyc function |
| popImprov2Cyc | popImprov2Cyc function |
| popImprovByMateSel | Run population improvement using mate selection |
| popImprovByParentSel | Run population improvement using parent selection |
| prodPipeFncChk | prodPipeFncChk function |
| productPipeline | productPipeline function |
| productPipelinePostBurnIn | productPipeline function for when a new bsp object has been... |
| productSelCritBLUP | productSelCritBLUP function |
| readControlFile | function to read a text control file |
| removeOldestCyc | removeOldestCyc function |
| repeatSim | repeatSim function |
| returnNonDom | returnNonDom function |
| runBreedingScheme | runBreedingScheme function |
| runOneRep | runOneRep function |
| sampleEntryNumbers | sampleEntryNumbers function |
| selCritGRM | selCritGRM function |
| selCritIID | selCritIID function |
| specifyBSP | specifyBSP function |
| specifyCosts | specifyCosts function |
| specifyPipeline | specifyPipeline function |
| specifyPopulation | specifyPopulation function |
| stageOutputs | stageOutputs function |
| testDom | testDom function |
| tidyrecords | tidyrecords function |
| tidysims | tidysims function |
| whereIsID | whereIsID function |
