initializeScheme: initializeScheme function
In wolfemd/alphaSimHlpR: Functions added to AlphaSimR to simplify simulating breeding schemes
Description
Usage
Arguments
Details
Value
Examples
View source: R/InitializationFunctions.R
Description
function to initialize simulation of a breeding program. A single additive-dominance trait is simulated. Check are used in this scheme
Usage
1
initializeScheme(bsp, nThreadsForMacs = NULL)
Arguments
bsp
A list of breeding scheme parameters. See specifyPipeline and specifyPopulation
nThreadsForMacs
uses the nThreads argument in runMacs2, parallelizes founder sim by chrom.
Details
Creates the founders and the initial records at the beginning of the simulation of a breeding program.
Value
A list containing: 1. The simulation parameters in SP; 2. The initial records of the breeding program in records. See fillPipeline for details; 3. A completed bsp object
Examples
1
2
3
4
5
6
bsp <- specifyPopulation(bsp)
bsp <- specifyPipeline()
initList <- initializeScheme(bsp)
SP <- initList$SP
bsp <- initList$bsp
records <- initList$records
wolfemd/alphaSimHlpR documentation built on Sept. 19, 2021, 6:25 p.m.
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Description Usage Arguments Details Value Examples
View source: R/InitializationFunctions.R
Description
function to initialize simulation of a breeding program. A single additive-dominance trait is simulated. Check are used in this scheme
Usage
1 | initializeScheme(bsp, nThreadsForMacs = NULL)
|
Arguments
bsp |
A list of breeding scheme parameters. See |
nThreadsForMacs |
uses the nThreads argument in |
Details
Creates the founders and the initial records at the beginning of the simulation of a breeding program.
Value
A list containing: 1. The simulation parameters in SP; 2. The initial records of the breeding program in records. See fillPipeline for details; 3. A completed bsp object
Examples
1 2 3 4 5 6 | bsp <- specifyPopulation(bsp)
bsp <- specifyPipeline()
initList <- initializeScheme(bsp)
SP <- initList$SP
bsp <- initList$bsp
records <- initList$records
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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