fisherExact: get p-values using fishers exact test for count data

Description Usage Arguments Value Examples

View source: R/getValuesForVolcano.R

Description

get p-values using fishers exact test for count data

Usage

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fisherExact(x, y, accessions)

Arguments

x

- array

y

- array

accessions

accession string

Value

data frame with accessions, pval, pvaldj (BH adjusted p.values), fchange (log2 FC).

Examples

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accessions <- letters
x <- sample(100,length(letters))
y <- sample(100,length(letters))
res <- fisherExact(x,y,accessions)
volcanoplot(res$fchange, res$pvaladj, labels = res$accessions)

wolski/quantable documentation built on Dec. 7, 2018, noon