Man pages for wpeterman/ResistanceGA
Optimize resistance surfaces using genetic algorithms
| all_comb | Analyze all combinations |
| Combine_Surfaces | Combine multiple resistance surfaces together |
| CS.prep | Prepare and bundle input CIRCUITSCAPE model parameters |
| Dc_list | Data file. A list of three matrices |
| Diagnostic.Plots | Create diagnostic plots |
| GA.prep | Create R object with genetic algorithm optimization settings |
| gdist.prep | Prepare data for optimization using 'gdistance' |
| Grid.Search | Conduct grid search of response surface |
| jl_out | Data file. Example raster output from CIRCUITSCAPE Julia |
| jl.prep | Prepare and bundle input CIRCUITSCAPE model parameters to run... |
| k.smooth | Kernel smoothing function |
| lower | Make a vector of the lower half of a square distance matrix |
| MLPE.lmm | Run maximum likelihood population effects mixed effects model... |
| mlpe_rga | Run maximum likelihood population effects mixed effects model... |
| MS_optim | Simultaneous optimization of multiple resistance surfaces |
| pipe | Pipe operator |
| Plot.trans | Plot continuous surface transformation |
| raster_orig | Data file. Simulated original resistance surfaces |
| raster_true | Data file. Simulated true resistance surfaces |
| ResistanceGA-package | About this R package |
| resistance_surfaces | Data file. Simulated resistance surfaces |
| Resistance.tran | Apply transformation to continuous resistance surface |
| Resist.boot | Run bootstrap on optimized resistance surfaces |
| resist_list | Data file. A list of three matrices |
| Run_CS | Run CIRCUITSCAPE in R |
| Run_CS.jl | Run Julia version of CIRCUITSCAPE from R |
| Run_gdistance | Get cost distance using gdistance Execute gdistance |
| sample_pops | Data file. A list of three 'sp' objects |
| samples | Data file. Example sample location file |
| SHNe | Calculate distance-based Spatial-Heterogeneity-in-Ne (SHNe)... |
| SS_optim | Single surface optimization |
| To.From.ID | Convenience function to make to-from object needed for... |
