all_comb | Analyze all combinations |
Combine_Surfaces | Combine multiple resistance surfaces together |
CS.prep | Prepare and bundle input CIRCUITSCAPE model parameters |
Dc_list | Data file. A list of three matrices |
Diagnostic.Plots | Create diagnostic plots |
GA.prep | Create R object with genetic algorithm optimization settings |
gdist.prep | Prepare data for optimization using 'gdistance' |
Grid.Search | Conduct grid search of response surface |
jl_out | Data file. Example raster output from CIRCUITSCAPE Julia |
jl.prep | Prepare and bundle input CIRCUITSCAPE model parameters to run... |
k.smooth | Kernel smoothing function |
lower | Make a vector of the lower half of a square distance matrix |
MLPE.lmm | Run maximum likelihood population effects mixed effects model... |
mlpe_rga | Run maximum likelihood population effects mixed effects model... |
MS_optim | Simultaneous optimization of multiple resistance surfaces |
pipe | Pipe operator |
Plot.trans | Plot continuous surface transformation |
raster_orig | Data file. Simulated original resistance surfaces |
raster_true | Data file. Simulated true resistance surfaces |
ResistanceGA-package | About this R package |
resistance_surfaces | Data file. Simulated resistance surfaces |
Resistance.tran | Apply transformation to continuous resistance surface |
Resist.boot | Run bootstrap on optimized resistance surfaces |
resist_list | Data file. A list of three matrices |
Run_CS | Run CIRCUITSCAPE in R |
Run_CS.jl | Run Julia version of CIRCUITSCAPE from R |
Run_gdistance | Get cost distance using gdistance Execute gdistance |
sample_pops | Data file. A list of three 'sp' objects |
samples | Data file. Example sample location file |
SHNe | Calculate distance-based Spatial-Heterogeneity-in-Ne (SHNe)... |
SS_optim | Single surface optimization |
To.From.ID | Convenience function to make to-from object needed for... |
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