Annotation and analysis of biological dynamical systems using flow cytometry

addbs | Add background subtraction to a summary data frame |

addnorm | Normalize fluorescence |

annotateFlowSet | Annotate a flowSet with experimental metadata |

createAnnotation | Create an annotation dataframe |

dipdoubletGate | A gate for the set of all diploid doublets |

dipsingletGate | A gate for the set of all diploid singlet yeast cells |

flsummary | Get summary statistics for fluorescence or other data... |

getTime | Get the time at which at flowFrame began collection |

hapdoubletGate | A gate for the set of all haploid doublets |

hapsingletGate | A gate for the set of all haploid singlets |

loadGates | Load a yeast gate file |

ploidy | Guess the ploidy of a given flowframe |

polygate | Create a polygon gate |

qaGating | Quality assurance check |

read.plateSet | Read FCS files from set of plates |

saveGates | Save a yeast gate set |

steadyState | Analysis of steady state fluorescence flow cytometry |

summarizeFlow | Generate summary statistics for a flowSet |

yeastGate | A gate for the set of all yeast cells |

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