Load_metadata: Load_metadata
In wsteenhu/FEAST: FEAST: fast expectation-maximization for microbial source tracking
Description
Load metadata file - A tab-separated ASCII text file.
The row names of metadata table are the unique sample ids.
The metadata file has three colunms (i.e., 'Env', 'SourceSink', 'id').
The first column is a description of the sampled environment (e.g., human gut), the second column indicates
if this sample is a source or a sink (can take the value 'Source' or 'Sink'). The fourth column is the Sink-Source id.
When using multiple sinks, each tested with the same group of sources, only the rows with 'SourceSink' = Sink will get an id
(between 1 - number of sinks in the data). In this scenatio, the sources ids are blank. When using multiple sinks,
each tested with a distinct group of sources, each combination of sink and its corresponding sources should get the
same id (between 1 - number of sinks in the data). Note that these names must be respected.
Usage
1
Load_metadata(metadata_path)
Arguments
metadata_path
A path to a tab-separated ASCII text metadata file.
wsteenhu/FEAST documentation built on Jan. 14, 2022, 6:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Load metadata file - A tab-separated ASCII text file. The row names of metadata table are the unique sample ids. The metadata file has three colunms (i.e., 'Env', 'SourceSink', 'id'). The first column is a description of the sampled environment (e.g., human gut), the second column indicates if this sample is a source or a sink (can take the value 'Source' or 'Sink'). The fourth column is the Sink-Source id. When using multiple sinks, each tested with the same group of sources, only the rows with 'SourceSink' = Sink will get an id (between 1 - number of sinks in the data). In this scenatio, the sources ids are blank. When using multiple sinks, each tested with a distinct group of sources, each combination of sink and its corresponding sources should get the same id (between 1 - number of sinks in the data). Note that these names must be respected.
Usage
1 | Load_metadata(metadata_path)
|
Arguments
metadata_path |
A path to a tab-separated ASCII text metadata file. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.