Man pages for wsteenhu/microbiomer
Package Containing Utility-functions to Work with Microbiota-data
| create_bar | Create a per-sample barplot of the top _n_ OTUs/ASVs |
| format_OTU | Function to reformat OTU names for plotting. |
| get_topn | Extract the top _n_ OTUs from a phyloseq-object |
| log10_px | log10 pseudocount conversion |
| make_color_scheme | Expands colors of any brewer.pal-scheme to _n_ colors |
| meta_to_df | Convert phyloseq metadata (sample_data) to dataframe. |
| otu_tab_to_df | Convert phyloseq OTU-table (otu_table) to dataframe. |
| pipe | Pipe operator |
| prep_bar | Prepare data for barpot |
| pres_abund_filter | Filter phyloseq-object based on presence/absence |
| ps_NP | Nasopharyngeal (NP) microbiota data of young infants. |
| ps_to_df | Combine phyloseq OTU-table (otu_table) and metadata... |
| to_RA | Convert phyloseq with raw read counts to relative abundance |
