ps_to_df: Combine phyloseq OTU-table (otu_table) and metadata...
In wsteenhu/microbiomer: Package Containing Utility-functions to Work with Microbiota-data
Description
Usage
Arguments
Value
See Also
Examples
Description
Combine phyloseq OTU-table (otu_table) and metadata (sample_data) into one dataframe.
Usage
1
ps_to_df(ps, sample_name = "sample_id")
Arguments
ps
phyloseq-object
sample_name
name of the column containing samples (default: 'sample_id')
Value
A dataframe with OTU-data and metadata contained in phyloseq.
See Also
Examples
1
2
wsteenhu/microbiomer documentation built on March 11, 2021, 6:05 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also Examples
Description
Combine phyloseq OTU-table (otu_table) and metadata (sample_data) into one dataframe.
Usage
1 | ps_to_df(ps, sample_name = "sample_id")
|
Arguments
ps |
phyloseq-object |
sample_name |
name of the column containing samples (default: 'sample_id') |
Value
A dataframe with OTU-data and metadata contained in phyloseq.
See Also
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.